I need help. Badly!

I have an ESP LTD MH1000, 25.5" scale, mahogany body, three-piece maple set-neck-though (deeper set neck), rosewood fretboard, TOM bridge w. string-through-body, Earvana nut and Sperzel locking tuners. Stringed with D'Addario NYXL 11-52 (at the moment - different brands of strings don't really affect the problem I'm having) and tuned to drop C.
It's equipped with an alnico Nailbomb in the bridge and a VHII in the neck - pretty much what has been touted at the quintessential metal pickup combo in some circles of the modern metal/djent community on Facebook.
Both pickups are installed with coil split, by a guy with an electrical engineering degree halfway under his belt, who knows how to solder, how to read a pickup wiring schematic and has been modding his own guitars for years. 500k volume pot, 500k Bourns push/pull tone knob, 0.022 cap on the tone pot.
The VHII is full and warm, like a hot PAF neck pickup, maybe a tiny bit too fat, but the A-bomb is obscenely fat in the low end - morbidly obese. I just can't rid of the insane amount of bass. Here's what I've tried:
- Raising and lowering the pickups. To get the right amount of saturation for distortion they've been raised around 2 mm. from the strings. I've also tried adjusting the pole pieces.
- Bought a 10-band MXR KFK1 EQ pedal and dropped 31.25 Hz, 62.5 Hz and 125 Hz by 12dB, dropped 250 Hz by 6dB and raised 500 Hz by around 3dB. This helped a little, but the low end is still very overpowering.
- I've run the EQ in front of several different distortion and fuzz pedals, some with cut/boost circuits, some with regular tone controls, and most recently running a DOD Carcosa fuzz with the hi-cut knob at 3 o'clock (allowing most of the highs through) after the EQ enabled. Luckily this fuzz has a healty dose of mids, mostly lower mids, so it growls sufficiently.
- Today I had an acquaitance look over my rig. He runs his own repair shop fixing guitars and amps, he has played metal in several different bands, helped build rigs for other metal bands in the local area and is involved in a local recording studio. Upon listening to my rig he identified the problem to be, and I'm paraphrasing here, right around or below the "palmmute range" just below where my amp's EQ starts working.
Now, I'm plugging into an Orange Rocker 30 - not the most versatile amp, EQ-wise. The clean channel is just volume knob, but the amp is voiced really well. My Strat, Tele and a friend's Les Paul all sound great on the clean channel. The dirty channel has volume, gain and a 3-band EQ. Dialing the bass all the way down doesn't really help either. I have an Orange 2x12" open-back cab. I've tested the guitar on my other amp; an Orange TH100, thorugh a Line 6 POD HD500X, a Fender Hot Rod Deville and a Diezel Einstein w. a Marshall 4x12" cab connected.
It's... always... the... f***ing... same. There's just too much bass.

I play a mix of modern metal (think Deftones) and sludge rock/metal and/or alternative metal (think less technically advanced Baroness, Mastodon, The Sword with focus on riffs and groove).
What can I do?
TL;DR: Halp! Too much bass. What to do? Get different pickups?