I've been having the same problem with this guitar, no matter what pickups I put in it.
Microphonic feedback when I hold the strings. It happens when the amp has been turned up to a certain volume. It's definitely not the amp, as my other guitars don't do this. This also happens on any amp I use this guitar with.
One curious thing is that this feedback won't happen until I turn the tone knob all the way to treble.
The pickups are mounted well, and don't move. They're brand new Nailbombs. I had the same problem with a set of Dimarzios, in both the bridge and neck positions.
The guitar is an RG1527 and has direct mount for pickups. I'm wondering that maybe the pickups are touching the body? I've rewired everything a number of times with no luck. Everything works the way it should with switching, except for the microphonic feedback.