My Epi Les Paul has the same problem - it looks somewhat wonky but only when you know the problem's there. It really put me off the guitar for a while when I first noticed (some years after acquiring it :roll: ).
However, it plays fine, tunes and intonates OK, sounds good, etc, etc... My biggest niggle was the neck pickup polepiecess not lining up with the strings 100%. But that was cosmetic really, I couldn't hear a big tone problem over it, and it went away when I installed pups without covers - they line up almost perfect.
As it's a cheapy, if yours can do the above (play, tune, etc), I'd say don't mess with it.