Nice one JT. Great job Jonathan.
If you like the PRS swtching, but hate the rotary control, ask Jonathan to use the Megaswitch-P (StewMac sell it, but I think Schaller make it). It gives you all the PRS sounds in a strat style switch. I have it on my Warmoth PRS clone with a calibrated set of MM's. It is so much easier than the PRS set up!
The guitar looks great, the sepia burst will look great on it. Like you, I prefer to leave the back wood clear, I don't know why PRS finishes a lot of them in a dark finish (unless it is to hide cheaper wood on the back!).
I am sure you can't wait to get it out and play.