They sounded quite identical to me to be honest.
that's for various reasons, i think...
1)modeling maybe levels a bit different tones. just a bit, though... i can still hear differencies very clearly when i play
2)compression kills a lot of frequencies (the file is at 192 kbps but it's still an heavy compression)
3)i couldn't say it for sure, but i noticed that to evaluate different pickup tones it's better to play on the same backing track (as i did in this "shootout"
http://bareknucklepickups.co.uk/forum/index.php?topic=15397.0 using a standard backing track recorded with a somewhat neutral pickup - the JB)... ears judge tones also by confronting them with surrounding sounds, so (maybe) if you use the same sound for both rhythm and lead track they "compensate" each other...
when i'm the only guitarist in the band i'm currently playing with i've got a pretty nice tone (i use a valve amp for rehearsals and lives), but when i play along the other guitarist (who's got an ear-piercing screechy solid state tone and no money to get something better :)) my tone seems the darkest and deepest doom sound on earth...
4)you'd better use headphones... :P