I still think that, even in mass produced guitars, there are many, many other variables that might make a difference - different glue in the neck joint, electrics wired differently etc. It would be very hard to pin tonal differences down to wood alone, wouldn't it?
how about 2 guitars made in the same batch in exactly the same way with exactly the same spec and exactly the same type of wood. Of course they will sound similar, but they rarely sound the same.
its a combination of everything but when building for a certain tone I start with the woods and construction method and build up from there.... i cant just decide on the string length and gauge
I recal the exact moment I had this driven home to me, rather forcibly -
Academy of sound (previously A1 music, later sound control) manchester, oxford street - they just got a batch of epi gothics in. I had a muck about with 2 explorers.
1 - nice guitar, spanky but with depth, good strong resonance, lively, harmonics came out easy and it had good thunk. liked it
2 - dead as a $%ing doornail. Just a wooly boomy sustainless mess.
Checked them over thoroughly - new strings, same action, same batch out of the factory, damn near identical serial numbers even - a few digits out from one another. As close as two gutiars can get to one another and one was pretty good and one was a cricket bat with strings on. The only thing that I couldnt see that could have plausibly cause the difference was the neck join - no way to tell how much glue was in each, and if one had A LOT more and no wood:wood contact in the join that may have caused the difference, I suppose. From the outside they were the same, however.
Conclusion - the same wood species can even sound very different from one guitar to the next. This has born out repeatedly in my experience, comparing on-paper extremely similar guitars, including wood species; they often have rather different sounds.