I have tried a few combos in different woods. I like the following.
Walnut: Bridge - Holy Diver, Neck - Irish Tour
Basswood: Bridge - VHII, Mid/Neck Sultans (really nice when rolled back a bit)
Mahogany/Maple: Rebel Yell Set
Thru-neck Charvel (maybe Poplar) Bridge - Miracle Man, Neck Trilogy Suite.
I am undecided on the following.
Baswood or Poplar (not really sure) - Rebel Yell set. Worked OK, just wasn't quite right bit awesome harmonics etc. I think it was the wood rather than the pickups though.
I didn't like
Trilogy Suite in Basswood
I am about to try
Alder: Bridge - VHII, Neck/Mid Sultans
Paduak: Rebel Yell set (really high hopes for this)