We dont have to like the results, in fact I hate that it could be true, and it means that I've paid way too much for some of my guitars, but he has evidence and all we have to argue against it is our highly charged opinion
He doesn't have irrefutable evidence. we need more details of the guitars and the tests, and to see some actual evidence
all we have is our highly charged opinions based on extensive experience working with guitars and a basic knowledge of physics. to be honest I am always happy to see these kinds of tests - but we are a long way from having any actual evidence!
I have made guitars from many kinds of woods, all traditional types and quite a few more unusual choices too. And i have worked on and played enough different kinds of guitar to know that there is a difference. If he can't hear the difference between a strat and a les paul, even with the same type of pickup in the same position then whatever he is using to measure the sound is not up to the task. But we have no details of the tools he is using.
Also he talks about having pickups in "exactly the same position". Now if he is using guitars with different scale lengths then this also causes issues. lets say you put all pickups exactly 2" from the bridge. that is not exactly the same position relative to the whole string length if the scale length is different, and you could be sensing very different vibrational patterns. so he should be hearing a difference here too - if he isnt then again I would say he is measuring the wrong thing.
he says he has had people listen to the clips and they can't tell the difference. but we have no details of recording set-up or how the test was conducted. Could be that the sounds were recorded through a modeller, and played back through cheap headphones... limiting the chances of hearing the differences. without knowing different we have no evidence to the contrary
Ignore whether wood makes a difference for a minute. because if he cant detect the difference caused by scale length then i dont trust he has any chance of picking up the differences caused by wood.
A the moment the strength of his argument is very weak and disproves nothing. Hopefully the actual paper will be much more detailed and contain something worth discussing.
Science isn't about just presenting evidence and saying "that proves that". Its subject to peer review, but then it sounds like this is just degree level research so really its just about showing how well you can apply the scientific process and understanding what you could do better rather than providing ground breaking answers to THE questions. At least he will have plenty to write about in his discussion