I have Rebel Yells in my standard 24. I love the sound, but I'm more of a classic rock player. However the pickups are not muddy at all and have great harmonics and tone. I have a Cold Sweat set in my BC Rich Mockingbird, which is all mahogany and they sound excellent, so I would expect that they would work just as well in a PRS.
PRS are very secretive about their pickup specs!
Have you recorded the sound of your guitar without pickups?