Very cool, good to hear that. I also have my Abraxas set quite close to the strings.
By lowering the polepieces on the bridge pickup and raising the pickup you shifted the balance in favor of the neckside coil which - being closer to the neckside - picks up less treble so you intuitively did the right thing. That is what I do mostly to my bridge pickups, too, unless I want more bite - then I lower the pickup and raise the polepieces.
The most prevalent problem I have with neck humbuckers is boomy lows. With my Abraxas neck I removed the polepieces of the low E and A strings which really helped. On other pickups, i.e. the Holydiver neck, Rebel Yell neck or Black Dog neck it did not have a noticeable effect. Could be the cover - these pickups are all covered whereas my Abraxas neck does not have a cover.
Cheers Stephan