Neck woods all depend what you are going for, I have several HSS strats and also have put together several more for TO with humbuckers in the bridge with maple and ebony fingerboards.
I have a SSS strat with an Angare/Pau Ferro neck and a HSH on an Ibanez body with a Satine/Ebony neck. I am just putting together a Warmoth Mockingbird with an Aframosa neck.
I will be buildind 2 other guitars with 'Exotic' necks this year. One will be a Tele with Bubunga/Zircote and the other will be a 'CBS' strat with Goncalo Alves with hopefully a Wenge fingerboard.
In my swamp ash with maple/ebony I have a Holy Diver with 2 Trilogy's, I have the one on order with Rebel Yell and 2 Mothers Milk's (rosewood fingerboard), I have one with an MQ and Slowhands with walnut/ebony, and the Ibanez has Nailbomb/Irish Tour/Cold Sweat.
TO has VHII and Cold Sweat bridge humbuckers, with IT and Trilogy neck single coils (with maple and maple/ebony necks).
All of them have great but distinctive sounds, and pretty much in all cases I was able to bring the neck in line with the bridge.
I personally like unlacquered fingerboards, even my 57 Strat has lost all the lacquer! With that in mind, the pau ferro is inbetween rosewood and ebony.
Satine is a hard wood, but has a great colour and works well with basswood in the body. bubinga and goncalo alves are more mahogany'ish and angare is between mahogany and maple.