Ok, here goes
1. Anything but spalt maple (looking at it makes me feel ill) preferably the flame maple
2. The shape is a difficult one, but I really like the BC Rich Eagle :P (Picture
here for those who may not have seen one)
3. My preferred neck/ fretboard wood is, and always will be, maple on maple - although from the choices you gave, I'd take the Zebrano, with that Bocote board (i like the grain pattern on that)
4. TOM - String thru, no question lol
5. I'd take either a pair of Abraxas, or Abraxas/MQ
6. GREENBURST! :D
Ooo, I'm getting myself all excited now - any chance I could pay you to build what i've just come up with there? :P