I think that sort of analysis (fourier transforms) really has a lot of potential for pickup EQ analysis, and thanks for doing it!
The downfalls that it may have are that that response is specific to the pickup in that guitar, that tuning, that string guage; you could take a lot of fourier power spectra of the same pickup in lots of guitars and average them up, and then do away with this vague and really quite unhelpfull convention of 'bass mid treble, 0-10', but thats considerably more effort from people with the means, know-how and inclination to do them (but if its worth doing its worth doing; its just a bit of work).
The other thing is interpretability. Most people arent accustomed to seeing fourier spectra and really understanding what they're seeing and how it relates to guitar sound and human hearing (fletcher munson equal loudness curves should probably be included!)
BUT!
If people like these, then I for one would be up for seeing, say, a curve for X pickup in a les paul/SG/dark guitar and a curve for a stereotypical bright guitar, superstrat type thing alongside the average numbers, and can and would create similar curves for the pickups I have now (not many left - I simplified my pickup setups to 2x c-bomb and 2 x aftermath bridge, so the aftermaths out for a start, because it doesnt officially exist yet, and the c-bomb is a 'custom' variation, not a main line).
I dont expect many people can provide them, though. (That said, if tim likes the idea, he has the means to do it; lots of guitars and lots of BKs; theres plenty of software around that will create a fourier power spectra for a sound sample).
I'll fire Tim a PM and reference him to your graphs, this page of the thread, or whatever. Actually screw it I'll just phone him now; I'll let you know what he says.